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weight: calculates sequence weights for an alignment


weight - calculates sequence weights for an alignment


weight [-options] <alignment file>


This manual page documents briefly the weight command. weight is a program that calculates weights for a sequence alignment.
Available options: -b <f> Use BLOSUM weighting scheme at <f> fractional identity. -f <f> Filter out seqs w/ fractional ident > <x> [0-1]. -h Help; print version and usage info. -o <file> Save weight-annotated alignment in <outfile>. -p Use position based weight scheme (Henikoff & Henikoff). -s <n> Sample <n> sequences at random into a new alignment. -v Use Voronoi weight scheme (Sibbald & Argos). --informat <s> Specify alignment file format <s>. Allowed formats: SELEX, MSF, Clustal, a2m, PHYLIP. --quiet Suppress verbose banner.
afetch(1), alistat(1), compalign(1), compstruct(1), revcomp(1), seqsplit(1), seqstat(1), sfetch(1), shuffle(1), sindex(1), sreformat(1), stranslate(1),


Sean Eddy HHMI/Department of Genetics Washington University School of Medicine 4444 Forest Park Blvd., Box 8510 St Louis, MO 63108 USA Phone: 1-314-362-7666 FAX : 1-314-362-2157 Email: eddy@genetics.wustl.edu This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may be used by others). Mon, 01 Aug 2005 15:28:08 -0300 WEIGHT(1)

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