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edialign: Local multiple alignment of sequences


edialign - Local multiple alignment of sequences
edialign -sequences seqset -nucmode list -revcomp boolean [-overlapw selection] [-linkage list] [-maxfragl integer] -fragmat boolean -fragsim integer [-itscore boolean] [-threshold float] -mask boolean -dostars boolean -starnum integer -outfile outfile -outseq seqoutall edialign -help
edialign is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Alignment:Multiple" command group(s).


Input section -sequences seqset Additional section -nucmode list Nucleic acid sequence alignment mode (simple, translated or mixed) Default value: n -revcomp boolean Default value: N -overlapw selection By default overlap weights are used when Nseq =<35 but you can set this to 'yes' or 'no' Default value: default (when Nseq =< 35) -linkage list Clustering method to construct sequence tree (UPGMA, minimum linkage or maximum linkage) Default value: UPGMA -maxfragl integer Default value: 40 -fragmat boolean Default value: N -fragsim integer Default value: 4 -itscore boolean Default value: N -threshold float Default value: 0.0 Output section -mask boolean Default value: N -dostars boolean Default value: N -starnum integer Default value: 4 -outfile outfile -outseq seqoutall


Bugs can be reported to the Debian Bug Tracking system (//bugs.debian.org/emboss), or directly to the EMBOSS developers (//sourceforge.net/tracker/?group_id=93650&atid=605031).


edialign is fully documented via the tfm(1) system.


Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. EDIALIGN(1)

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