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edialign

man page of edialign

edialign: Local multiple alignment of sequences

NAME
       edialign - Local multiple alignment of sequences

SYNOPSIS
       edialign -sequences seqset -nucmode list -revcomp boolean
                [-overlapw selection] [-linkage list] [-maxfragl integer]
                -fragmat boolean -fragsim integer [-itscore boolean]
                [-threshold float] -mask boolean -dostars boolean
                -starnum integer -outfile outfile -outseq seqoutall

       edialign -help

DESCRIPTION
       edialign is a command line program from EMBOSS ("the European Molecular
       Biology Open Software Suite"). It is part of the "Alignment:Multiple"
       command group(s).

OPTIONS
   Input section
       -sequences seqset

   Additional section
       -nucmode list
           Nucleic acid sequence alignment mode (simple, translated or mixed)
           Default value: n

       -revcomp boolean
           Default value: N

       -overlapw selection
           By default overlap weights are used when Nseq =<35 but you can set
           this to 'yes' or 'no' Default value: default (when Nseq =< 35)

       -linkage list
           Clustering method to construct sequence tree (UPGMA, minimum
           linkage or maximum linkage) Default value: UPGMA

       -maxfragl integer
           Default value: 40

       -fragmat boolean
           Default value: N

       -fragsim integer
           Default value: 4

       -itscore boolean
           Default value: N

       -threshold float
           Default value: 0.0

   Output section
       -mask boolean
           Default value: N

       -dostars boolean
           Default value: N

       -starnum integer
           Default value: 4

       -outfile outfile

       -outseq seqoutall

BUGS
       Bugs can be reported to the Debian Bug Tracking system
       (//bugs.debian.org/emboss), or directly to the EMBOSS developers
       (//sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO
       edialign is fully documented via the tfm(1) system.

AUTHOR
       Debian Med Packaging Team
       <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT
       This manual page was autogenerated from an Ajax Control Definition of
       the EMBOSS package. It can be redistributed under the same terms as
       EMBOSS itself.

                                                                    EDIALIGN(1)