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mollist

man page of mollist

mollist: get identifiers list molrev

NAME

mollist - get identifiers list molrev - reverse DNA sequences molcat - concatenate sequences molcut - get partial sequences molmerge - merge sequences nuc2ptn - DNA -> Amino acid rminsdel - remove INS/DEL sites molcodon - get specified codon sites molinfo - get varied sites mol2mol - MOLPHY format beautifer int2mol - Interleaved -> MOLPHY mol2int - MOLPHY -> Interleaved mol2phy - MOLPHY -> Sequential phy2mol - Sequential -> MOLPHY must2mol - MUST -> MOLPHY many more perl conversion utilities which are not further described

SYNOPSIS

MolPhy Utilities is a program package for MOLecular PHYlogenetics which includes several Perl utilities: mollist [sequence_file] molrev [sequence_file] molcat [sequence_file] molcut [sequence_file] molmerge [sequence_file] nuc2ptn [switches] [sequence_file] rminsdel [switches] [sequence_file] molcodon [sequence_file] molinfo [switches] [sequence_file] mol2mol [sequence_file] inl2mol [sequence_file] mol2int [sequence_file] mol2phy [sequence_file] phy2mol [sequence_file] must2mol [sequence_file] ali2mol [sequence_file] clus2mol [sequence_file] degene4l [switches] [sequence_file] degene4 [switches] [sequence_file] disjoint [sequence_file] dna2ami [options] [no_align_files] eali2mol [EMBL_ALIGN_file] egetcds [EMBL_file] getcds [EMBL_file] egetcds [Genbank_file] info2mol [sequence_file] infocode [switches] [sequence_file] infocode [switches] [sequence_file] mc2mol [sequence_file] mega2mol [sequence_file] mol2info [sequence_file] mol2seq [sequence_file] molcons [sequence_file] molsplit [sequence_file] njt2tpl [machine_readable_tree_with_branch_length] mol2mol [sequence_file] nuc2NUC [sequence_file] rmid3 [switches] [sequence_file] rmleu [switches] [sequence_file] rmsyno [switches] [sequence_file] seq2mol [sequence_file] seqwrap [file]

DESCRIPTION

This is the Debian GNU/Linux version of the MOLPHY (ProtML) distribution, version 2.3. Copyright (c) 1992-1996, Jun Adachi & Masami Hasegawa. All rights reserved. MOLPHY is a program package for MOLecular PHYlogenetics. The perl utilities above are usefull to convert different formats of phylogenetic data.

AUTHOR

This manual page was written by Andreas Tille <tille@debian.org>, for the Debian GNU/Linux system (but may be used by others). MOLLIST(1)
 
 
 

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