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ali2gff

man page of ali2gff

ali2gff: Module to translate a MUMmer output files into gff formatted output.

NAME

ali2gff - Module to translate a MUMmer output files into gff formatted output.

SYNOPSIS

ali2gff [-r] [-t <.|0|1|2>] [-x <name>] [-y <name>] [-H] [-f] [-h] <MUMmer_output_file>

OPTIONS

-h, --help Show summary of options. -r Interchange the order of sequences (sequence 1 on y-axis, sequence 2 on x-axis). -t <.|0|1|2> Put label 'frame' in gff output. -x <name> Specify the species name for species1 (default: "Seq1"). -y <name> Specify the species name for species2 (default: "Seq2"). -i Ignore full sequence identities. -f Write output to file.
SEE ALSO
blat2gff(1), gff2aplot(1), parseblast(1), sim2gff(1).
AUTHOR
ali2gff was written by Steffi Gebauer-Jung. This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may be used by others). Mon, 21 Mar 2005 21:44:15 -0300 ALI2GFF(1)
 
 
 

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